Metaneighbor github
WebWith MetaNeighbor, we proposed an efficient and robust quantification of cell-type replicability that preserves dataset independence and is highly scalable compared to dataset integration. Web6 dec. 2024 · MetaNeighbor: a method to rapidly assess cell type identity using both functional and random gene sets. MetaNeighbor allows users to quantify cell type …
Metaneighbor github
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Web7 jul. 2024 · With MetaNeighbor, we proposed an efficient and robust quantification of cell-type replicability that preserves dataset independence and is highly scalable compared … Web16 okt. 2024 · Protocol data (R version) Cite. (737.16 MB) Version 2. Version 2 2024-10-16, 09:08. Version 1 2024-10-01, 07:57. dataset. posted on 2024-10-16, 09:08 authored by Jesse Gillis. We published 3 protocols illustrating how MetaNeighbor can be used to quantify cell type replicability across single cell transcriptomic datasets.
Web5 okt. 2024 · Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions ... Web2 nov. 2024 · High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and …
WebIn this vignette, we reproduce the MetaNeighbor cluster replicability analyses presented in the BICCN mouse MOp transcriptomic and epigenomic atlas, and provide guidance for … The purpose of this method is to measure the similarity of cells across single cell RNA-sequencing (scRNA-seq) datasets by sampling from both random and functionally defined gene sets. MetaNeighbor … Meer weergeven Because there is a ranking step, the code is not ideal for scaling in the R environment as is. The major factor is the total number … Meer weergeven MetaNeighbor runs as follows: first, we build a network of rank correlations between all cells for a gene set. Next, the neighbor voting predictor produces a weighted … Meer weergeven
Web25 sep. 2024 · Background Acute myeloid leukemia (AML) is a fatal hematopoietic malignancy and has a prognosis that varies with its genetic complexity. However, there has been no appropriate integrative analysis on the hierarchy of different AML subtypes. Methods Using Microwell-seq, a high-throughput single-cell mRNA sequencing platform, …
Web4 jul. 2024 · 作者提出的单细胞图卷积网络模型 (single-cell Graph Convolutional Network，scGCN)可以实现跨越不同数据集的知识转移 (knowledge transfer)。. 通过在30个单细胞组学数据集上进行基准测试实验，结果表明scGCN在利用来自不同组织、平台和物种以及分子层的细胞方面展现了优于 ... production schedule for handmade businessWeb8 nov. 2024 · In MetaNeighbor: Single cell replicability analysis. Description Usage Arguments Value. View source: R/meta_clusters.R. Description. Note that meta-clusters are *not* cliques, but connected components, e.g., if 1<->2 and 1<->3 are reciprocal top hits, 1, 2, 3 is a meta-cluster, independently from the relationship between 2 and 3. production schedule displayWeb8 nov. 2024 · MetaNeighbor / MetaNeighborUS: Runs unsupervised version of MetaNeighbor MetaNeighborUS: Runs unsupervised version of MetaNeighbor In … relation internationale paris 1Web5 okt. 2024 · UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets relation in tamilWebA system for 'declaratively' creating graphics, based on "The Grammar of Graphics". You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details. production schedule filmWebProvides a general-purpose tool for dynamic report generation in R using Literate Programming techniques. production schedule disco elysiumWeb4 mrt. 2024 · 二、单细胞整合方法介绍. 现在，我们可以获得越来越多的scRNA-seq数据集，对它们进行merge_seurat的方法就显得尤为重要。. 整合不同的scRNA-Seq数据集有两种主要方法。. 第一种方法是“以标签为中心”（label-centric），它侧重于通过比较单个细胞或细胞群来尝试识别 ... relation irp